Tie Koide

The single ECF sigma factor of Xylella fastidiosa is involved in the heat shock response and presents an unusual regulatory mechanism.
da Silva Neto JF, Koide T, Gomes SL, Marques MV.(2006)
J Bacteriol.2006 Nov 10;
[Pubmed] [Supplemental material]

Global gene expression analysis of the heat shock response in the phytopathogen Xylella fastidiosa.
Koide T, Vencio RZ, Gomes SL.(2006)
J Bacteriol. 2006 Aug;188(16):5821-30.
[Pubmed] [Supplemental material]

BayGO: Bayesian analysis of ontology term enrichment in microarray data.
Vencio RZ, Koide T, Gomes SL, Pereira CA. (2006)
BMC Bioinformatics. 2006 Feb 23;7(1):86
[Journal] [Supplemental material] [web tool]

SpotWhatR: an user-friendly microarray data analysis system
Koide T, Salem-Izacc SM, Gomes SL, Vencio RZN (2006)
Genetics and Molecular Research, 5, 93-107
[web page], [pub med] [.pdf], [Journal]

HTself: self-self based statistical test for low replication microarray studies
Vencio RZ, Koide T. (2005)
DNA Res. 2005;12(3):211-4.
[web tool, suppl material]

DNA microarray-based genome comparison of a pathogenic and a nonpathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence.
Koide T, Zaini PA, Moreira LM, Vencio RZ, Matsukuma AY, Durham AM, Teixeira DC, El-Dorry H, Monteiro PB, da Silva AC, Verjovski-Almeida S, da Silva AM, Gomes SL. (2004)
J Bacteriol. 186:5442-5449.
[pubmed], [paper supplemental material]

Insertional transposon mutagenesis in the Xylella fastidiosa Citrus Variegated Chlorosis strain with transposome.
Koide T, da Silva Neto JF, Gomes SL, Marques MV. (2004)
Curr Microbiol. 48:247-250.

Site-directed gene disruption in Xylella fastidiosa.
da Silva Neto JF, Koide T, Gomes SL, Marques MV. (2002)
FEMS Microbiol Lett. 210(1):105-110.

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Last modified: Apr/2004